这是我要做的：

>创建本地目录(或已存在)
>在云中生成与本地(based on this answer)相同名称的新github回购
>添加一个.git到本地的repo
>进行初始提交
>建立云回购与本地回购之间的联系
将commit和本地备份中的文件推送到github

我相信based on the output,在我失败之前,我得到了所有的方法到第5步(因为本地目录中的提交和文件不会在云中的github).我知道步骤2的工作原因是空的repo被创建here.我不知道如何测试步骤5.在最后一步shell(cmd6,intern = T)RGui和RStudio导致永恒的死亡螺旋.问题是：我如何将提交和本地的回购推送到云端.

这是我更新的代码(唯一的用户特定的是第三个代码块中的用户名和密码)：

## Create Directory
repo <- "foo5"
dir.create(repo)
project.dir <- file.path(getwd(),repo) 

## Throw a READ.ME in the directory
cat("This is a test",file=file.path(project.dir,"READ.ME"))

## Github info (this will change per user)
password <-"pass" 
github.user <- "trinker"  

## Get git location
test <- c(file.exists("C:/Program Files (x86)/Git/bin/git.exe"),file.exists("C:/Program Files/Git/bin/git.exe"))
gitpath <- c("C:/Program Files (x86)/Git/bin/git.exe","C:/Program Files/Git/bin/git.exe")[test][1]

## download curl and set up github api
wincurl <- "http://curl.askapache.com/download/curl-7.32.0-win64-ssl-sspi.zip"
url <- wincurl
tmp <- tempfile( fileext = ".zip" )
download.file(url,tmp)
unzip(tmp,exdir = tempdir())       
shell(paste0(tempdir(),"/curl http://curl.haxx.se/ca/cacert.pem -o ",tempdir(),"/curl-ca-bundle.crt"))
json <- paste0(" { \"name\":\"",repo,"\" } ") #string we desire formatting
json <- shQuote(json,type = "cmd" )
cmd1 <- paste0( tempdir(),"/curl -i -u \"",github.user,":",password,"\" https://api.github.com/user/repos -d ",json )

shell(cmd1,intern = T)

## Change working directory
wd <- getwd()
setwd(project.dir)

## set up the .git directory
cmd2 <- paste0(shQuote(gitpath)," init")
shell(cmd2,intern = T)

## add all the contents of the directory for tracking
cmd3 <- paste0(shQuote(gitpath)," add .")  
shell(cmd3,intern = T)       

cmdStat <- paste0(shQuote(gitpath)," status")  
shell(cmdStat,intern = T)

## Set email (may not be needed)
Trim <- function (x) gsub("^\\s+|\\s+$","",x) #remove trailing/leading white 

x <- file.path(path.expand("~"),".gitconfig")
if (file.exists(x)) {
    y <- readLines(x)
    email <- Trim(unlist(strsplit(y[grepl("email = ",y)],"email ="))[2])
} else {
    z <- file.path(Sys.getenv("HOME"),".gitconfig")
    if (file.exists(z)) {
        email <- Trim(unlist(strsplit(y[grepl("email = ","email ="))[2])
    } else {
        warning(paste("Set `email` in",x))
    }
}
cmdEM <- paste0(shQuote(gitpath),sprintf(" config --global user.email %s",email))        
system(cmdEM,intern = T)

## Initial commit
cmd4 <- paste0(shQuote(gitpath),' commit -m "Initial commit"')  
system(cmd4,intern = T) 

## establish connection between local and remote
cmd5 <- paste0(shQuote(gitpath)," remote add origin https://github.com/","/",".git")  
shell(cmd5,intern = T) 

## push local to remote 
cmd6 <- paste0(shQuote(gitpath)," push -u origin master")  
shell(cmd6,intern = T) 

setwd(wd)

我知道脚本有点长,但是重新创建问题和复制问题都是必要的：

注意我已经根据Simon的回应更新了这个问题,因为他是正确的,并且更接近于推动.原题的内容可以在here找到.